Carleton Bioinformatics
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Protocols:
Week 3: Introduction to Unix/Linux and the Server; Assembly with IDBA-UD
Week 4: Calling open reading frames with Prodigal, using BLAST, annotating genes with Interproscan
Week 5: Aligning with MUSCLE and Making Trees with RAxML
Week 6: Mapping with Bowtie2
Week 7: Binning Genomes with Anvi’o
Week 8: Classifying taxonomy of short reads with mothur
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Week 7: Binning Genomes with Anvi’o
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Week 7: Binning Genomes with Anvi’o
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